01. Downloading SRA Toolkit · ncbi/sra

#01. Downloading SRA Toolkit · ncbi/sra| 来源: 网络整理| 查看: 265

NCBI SRA Toolkit

Below are the latest releases of various tools and release checksum file.

SRA Toolkit

Compiled binaries/install scripts of December 12, 2022, version 3.0.2:

CentOS Linux 64 bit architecture - non-sudo tar archive Ubuntu Linux 64 bit architecture - non-sudo tar archive Cloud - apt-get install script - for Debian and Ubuntu - requires sudo permissions Cloud - yum install script - for CentOS - requires sudo permissions MacOS 64 bit architecture MS Windows 64 bit architecture Docker image repository md5 checksums Magic-BLAST

Magic-BLAST is a tool for mapping large next-generation RNA or DNA sequencing runs against a whole genome or transcriptome

Magic-BLAST executables for LINUX, MacOSX, and Windows as well as the source files are available on the FTP site Read more about Magic BLAST on the FTP site Third Party Software

Builds of Third Party Software Tools with SRA support:

HISAT2 version 2.2.1-ngs.3.0.1 - graph-based alignment of next generation sequencing reads to a population of genomes with direct support of SRA, built for: Linux 64 bit architecture Latest Source Code NCBI VDB Software Development Kit – December 12, 2022, version 3.0.2 release NCBI SRA Toolkit – December 12, 2022, version 3.0.2 release NCBI NGS Toolkit – December 12, 2022, version 3.0.2 release File checksums

You may validate downloaded files with md5 checksums computed using md5sum -b

Note

The NGS SDK releases are in (https://github.com/ncbi/sra-tools/wiki/09.-Downloading-NGS-SDK)

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